Jayapura is not on the current Ports of Entry list for Indonesia. The Port of Entry for this region and Papua is Biak.
However, recent reports indicate that it is possible to clear in here. If you have registered with the online system, be prepared to have to do the clearing in process manually if officials are not able to access the documentation on their computers.
Not all authorities are present so you will have to clear in with Customs in Biak.
While the process can take a few hours, officials from all departments are reported to be very polite and extremely helpful.
See Noonsite Indonesia Formalities for full details on clearance procedures for Indonesia.
Last updated: December 2019
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