A Guide to Checking in and out of Countries with your Sailboat

(June 15, 2019) – Liz Cleere, Jamie Furlong and rescue cat Millie on SY Esper have cruised through 14 countries from Turkey to Indonesia. Based on their experiences, they have put together a useful guide to checking in and out across borders with your sailboat.

Published 4 years ago


line up of people including clearance officials and liz of yacht Esper
Liz with the authorities in Belitung, Indonesia

Before we get into the nitty gritty, there are a couple of things to think about before you arrive at your new country:

  1. Remember that as soon as you hit territorial waters, ensure you hoist the courtesy flag for that country and your yellow quarantine flag underneath it . This is an international requirement for all vessels.
  2. You can only clear in and out of a country through an official Port of Entry
    – A lot of cruisers use noonsite.com which lists them by country. Other cruisers are also a good source of information (blogs, forums etc). BUT always double check with an embassy first for the most up to date information.
    – The location of ports of entry will impact your passage planning, so work out where you will make landfall and how long it will take to get to the port.
  3. TOP TIP: In our experience, most places will understand that it might take a few days for a sailboat to reach an official port, so as long as you stay on the boat at anchor and keep the quarantine flag flying when you arrive, you should be OK. This is the same once you have checked out, they will usually give you a few days grace to leave their waters.
  4. Some countries want advanced warning of your arrival. It’s not required where we are currently cruising, but Japan had very tight controls, so we will be required to inform them in advance of when and where we will arrive. This is known as an Advanced Notice of Arrival.

You may see this referred to as CIQ (Customs, Immigration, Quarantine).

Usually, you’ll be required to visit four offices. In some countries there may be more, sometimes fewer – the role of quarantine/customs/harbormaster may vary from place to place.

  • Immigration
  • Customs
  • Quarantine
  • Harbourmaster/Port Control

Sometimes they are located close to each other, but other times you’ll have to hire transport to get you between the offices, which might be miles apart.

And they will want you to do all this in the right order. In our experience, this varies from port to port, but when you check in quarantine is usually first, followed by immigration. The officers will tell you in which order to see each department.

Where going alongside is not viable, the clearance officers will come out to your boat. They usually have their own vessel, but sometimes you will have to pick them up in your dinghy. They may also want you to come to their land-based office afterward. Customs and Quarantine may want to come out to inspect your boat after visiting their offices on shore, so be prepared.

If you think anyone might come aboard, have everything shipshape.

In Indonesia, they will turn you away if men are not wearing long trousers, or are not respectfully dressed if you’re a woman (covered shoulders, trousers below the knee, etc). It’s good practice to dress smartly for clearance in any country, to show respect.

To minimize delays, and smooth the process, have all the right paperwork ready to show to the relevant clearance officers.

Here is a checklist of what you should carry with you when clearing in (this is not exhaustive and may vary from country to country):

  • Passport with a valid visa (when required)
  • Boat Registration certificate
  • Port Clearance certificate
  • Boat insurance policy – This is becoming a requirement around the world. They expect you to have third party liability and increasingly personal liability.
  • “Free Pratique” – see below
  • Ship’s stamp (in some countries)
  • MMSI number, and proof you have AIS capability (in Phuket they looked at their desktop monitor to confirm that we had AIS and that it was switched on)
  • Passport sized photos of each person aboard
  • Photocopies of everything – otherwise you might end up running around town trying to find somewhere to get documents copied, printing services are seldom close by.
  • Photo of the boat (Indonesia)

We have used an agent in Penang to obtain a three month Thai visa on several occasions. This takes away the headache of queueing and the expense of traveling back and forth to the embassy over 24 hours. Our agent doesn’t charge much and it means we can take the time being tourists on that beautiful island.

Shipping agents are notorious within the sailing community for charging large unnecessary fees to check you and your boat in, so most cruisers try to do it themselves. Occasionally you have no choice. In the Maldives, Langkawi and some ports in Indonesia, they insist on an agent, which can cost hundreds of dollars.



  • Even with a passport, you must be on your toes. Most countries require that your passport expiry date is no less than 6 months after the date of entry.
  • And they usually expect you to have ‘sufficient’ blank pages for them to add their stamp.
  • In some countries the only way you can get a new passport is to fly back to your own country to obtain one. This happened to people we knew in Thailand who lost their passports overboard! In this situation it was doubly bad because they had no details of their passports – keep a copy of your passport (and visa) on whichever cloud server you use, so you can pull up the details and prove you are who you say you are and that you have a passport.


We’re talking about the basic tourist visa here, but there is a whole raft of working, non-touristic, retirement, long-stay, etc visas available. The rules vary depending on which national passport you hold. If you’re a UK passport holder your visa requirements might be very different from someone with, say, a Turkish passport. Most of the rules are similar for the UK, US, Canada, Australia, EU, and New Zealand – but it still pays to check first.

Obtaining a visa before you arrive in a new country is sometimes compulsory, but even if it isn’t, it can mean a longer stay. And it often eases the process at check-in. Thailand, for example, will issue a three-month visa from their overseas embassies, but you only get 30 days there if you arrive without a visa (and that varies according to what passport you have).

When you are visiting a country that requires you to obtain a visa before arriving, you can usually do this at the embassy where you’re currently located. Beware India! They have been known to insist that you apply for a visa in the country where your passport was issued, requiring a potentially expensive trip home. BUT this changes all the time, so do your research!

And some countries with popular cruising grounds like Thailand, Malaysia, and Turkey are beginning to restrict the number of times you may visit in any given year.

Some countries are happy to issue a visa on arrival. For UK passport holders visiting Malaysia, you are issued with a three-month visa on arrival, no questions. It’s not always that easy.



They are not usually interested in your boat, they just want to check your passport and visa.

It becomes trickier if you moor the boat then leave the country (maybe for a holiday or trip home). In some places, it is a requirement for tourists to show an onward ticket when they return by air or road. Obviously, you can’t do this, so airport immigration may ask for some sort of proof that you are returning to your boat. We have used letters from a marina or boatyard to prove this, but a copy of the ship’s registration document and port of entry certificate should get you through without a problem.

In Thailand, you are sometimes required to pay a refundable bond at immigration if you leave the country while your boat remains there.


Think of customs as the police.

  • They have the legal right to inspect every inch of your boat if they choose.
  • They’re looking for anything illegal being brought into their country, like narcotics, animals, plants, food, etc. Remember to check beforehand for a list of banned items, as each country is different.
  • They’ll want to know if you have any weapons and ammunition. In some cases, they’ll hold these until you leave the country, or even confiscate them. So check before arriving.
  • Alcohol is another thing they’re always interested in. Some countries will seal your liquor locker for the duration of your stay. The main reason for this is so that you do not sell it to local inhabitants.
  • They’ll look at your medicine locker, and may want to see prescriptions for any regular medication you are taking.
  • Have all your documents to hand, they may want to look at everything!


  • The captain will be issued with a license commonly known as a “Free Pratique” to confirm that both crew and vessel are free from contagious disease. When you leave the country you must produce the certificate and receive a new one to take with you to your next destination.
  • Once again, have passports, crew lists, and all other documents ready to hand.
  • In some instances, the quarantine officers will want to inspect your boat.
  • Once they are happy, they will instruct you to remove the quarantine flag.

Harbour Master:

This office goes by different names in different countries (Port Authority etc.) and some of its responsibilities may be handled by Customs. This is not exhaustive, but have ready the following:

  • Boat’s registration document – every vessel is required by law to carry one of these. The information they contain may vary, but its main function is to prove in which country your vessel is registered.
  • Insurance certificate (third party + personal liability minimum)
  • Crew list
  • MMSI number and confirmation of AIS
  • Passport and visa
  • Copies of everything
  • Ship’s stamp

This is where you receive your Port Clearance – this is the certificate issued by all ports when you exit the country. It means your boat is stamped out of the country and proves to the next place that your boat has left the previous country legally. You must hand it over when you arrive at the next port.

DO NOT LOSE this certificate between countries otherwise you could be refused entry. It has been known.

Think very carefully about having a pet on board, because traveling with one is a whole other ball game, and will influence your sailing plans. Even with a “Pet Passport” your beloved pet may be put in quarantine, or at worse, euthanized. And it is only recognized in limited countries.

Because of Millie, we took the decision not to visit Australia or NZ (or even the UK) because of their stringent quarantine requirements. And recently, Australia has decided that if your pet has been to Indonesia it will not be allowed into Australia come what may.

    There is no denying that the whole process can be intimidating, but try to eliminate stress by ensuring you have all your documents to hand – and that includes copies of everything!
  • Choose one person to represent the vessel, because it can be confusing or irritating to the officer if you’re both giving answers at the same time.
  • Do your research before you get to the next country so you are familiar with its regulations.
  • Dress smartly and behave courteously – a smile goes a long way.
  • Don’t lose your cool, and try to be patient. 

We hope you found this useful. Remember, it’s based on our limited experience across 14 countries from Turkey to Indonesia. There are many countries we have not visited whose procedure will vary from ours.

Liz and Jamie

Click here for the accompanying video to this blog post.


The opinions expressed in this article are the author’s own and do not reflect the view of Noonsite.com or World Cruising Club.

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  1. July 17, 2019 at 10:09 PM
    crewcoastaldrifter says:

    Very well written. Even I can follow the protocols listed. Thank you

  2. July 11, 2019 at 3:00 PM
    nicster says:

    Hey liz and Jamie, I’ve been following your YouTube vlog for years from my landlocked home in Reading UK. And now I’ve finally got a boat (less the 2 weeks afloat) I see you here offering even more practical info. Love you guys even more now.
    Safe travels Nic Findlay
    (currently in Italy heading to Greece next week)

  3. June 18, 2019 at 6:59 PM
    chip says:

    What a great gift you have provided us. Thanks for all your hard work.